Scientific programmer

Description
The scientific programmer will support next-generation DNA sequencing data analysis and interpretation within the Cuppen group at the Hubrecht Institute. A wide range of genomic, genetic and epi-genetic data is generated by whole genome sequencing, RNA-seq, ChIP-seq, etc. You will be involved in raw data processing (primary analysis), secondary data analysis and data integration. You will implement publicly available software tools and develop in-house pipelines and tools to meet custom needs for data interpretation and hypothesis testing. You will be embedded in the Cuppen group, where extensive expertise is available with bioinformatics analysis of high-throughput and NGS DNA sequencing analysis and work closely together with both bioinformaticians and wet-lab biologists.

Requirements
The candidate must have a bachelors degree in computer sciences, preferably with a strong biological or bioinformatic component. The candidate should have experience/affinity with next-generation sequencing data analysis, parsing data (Perl) and be able to independently develop or implement software. Additionally, experience with Linux systems is required for management of large volumes of sequence data. Affinity and/or experience with cluster hardware and software management would be a plus. Strong social skills and the ability to work in a team is very important as the programmer will interact with a wide range of scientists and will depend on close collaborations with colleagues in the lab as well as bioinformaticians.

Salary
According to “CAO-Nederlandse Universiteiten” (CAO-NU), scale 7 or 8, depending on relevant work experience. The maximum gross monthly salary coming with a full-time appointment will amount to € 3,028.-, excluding 8% holiday allowance and a 8.3% year-end bonus. We offer an extensive package of fringe benefits.